Comparasite Full-length cDNA Database

Comparasite Full-length cDNA Database
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Structure of Comparasite



i) Search Forms

  • A. Select the species for which the search will be considered.
  • B. Specify the annotation terms which should be found in the target(s): Parameters used for generating annotations can be also adjusted.


ii) Comparative Results Summary


  • C. Search conditions used.
  • D. Summary of the hits and links to details

iii) Comparative Motif Viewer

  • A. Go to Promoter Element Viewer.
  • B. Display search conditions if used.
  • C. Structure of the hit Ref-fulls and links to Genome Viewer.
  • D. Link to Pair-wise alignment by Lalign.
  • E. Motif viewer: Positions of the identified conserved motifs.
  • F. Annotation details.


iv) Genome Viewer (I)

  • G. Specify zoom-in/out part.


iv) Genome Viewer (II)


v) ORF Viewer


vi) Annotation Viewer

  • K. Details of the annotations.


vii) Alignment Viewer


  • A. Aligned nucleotides are represented by red lines.
  • B. Alignment of this region calculated using TBLASN.
  • C. Set the cut-offs of alignment for display.
  • D. Display the selected alignment only.

viii) Search Forms for Promoter Elements

  • A. Select the species for which the search will be considered.
  • B. Specify the promoter element which should be found in the target(s).


ix) Promoter Element Viewer

  • A. Go to Comparative Motif Viewer.
  • B. You can input serch conditions again.
  • C. Promoter motif table.
  • D. Positions of the Identified promoter elements.
  • E. Positions of the Identified promoter elements details.


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