Help | Comparasite full-length cdna database

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Structure of Comparasite

i) Search Forms

A. Select the species for which the search will be considered.
B. Specify the annotation terms which should be found in the target(s): Parameters used for generating annotations can be also adjusted.

ii) Comparative Results Summary

C. Search conditions used.
D. Summary of the hits and links to details

iii) Comparative Motif Viewer

A. Go to Promoter Element Viewer.
B. Display search conditions if used.
C. Structure of the hit Ref-fulls and links to Genome Viewer.
D. Link to Pair-wise alignment by Lalign.
E. Motif viewer: Positions of the identified conserved motifs.
F. Annotation details.

iv) Genome Viewer (I)

G. Specify zoom-in/out part.

iv) Genome Viewer (II)

H. Ref-fulls and links to ORF Viewer.
I. Genome alignment and links to Alignment Viewer.

v) ORF Viewer

J. Links to Annotation Viewer.

vi) Annotation Viewer

K. Details of the annotations.

vii) Alignment Viewer

A. Aligned nucleotides are represented by red lines.
B. Alignment of this region calculated using TBLASN.
C. Set the cut-offs of alignment for display.
D. Display the selected alignment only.

viii) Search Forms for Promoter Elements

A. Select the species for which the search will be considered.
B. Specify the promoter element which should be found in the target(s).

ix) Promoter Element Viewer

A. Go to Comparative Motif Viewer.
B. You can input serch conditions again.
C. Promoter motif table.
D. Positions of the Identified promoter elements.
E. Positions of the Identified promoter elements details.