Comparasite Full-length cDNA Database
Comparasite Full-length cDNA Database
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Detailed Search

Detailed Search


Trans-species search

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Search by clone(gene) name

Check species:
Select species which should be considered for the search
Pf Pv Py Pb Cp Tg
Keyword:
Specify the motifs which should be found in the indicated species in common.
SOSUI(Transmembrane domain prediction)
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PSORT2(prediction of protein localization sites in cells)

Select list
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BLAST(blastp hit <= (1.0e-05))

E_VALUE(defaut <= 1.0e-05)

Keyword
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Pfam(InterProScan)(Protein Motif)

Select Program
HMMPfam HMMSmart
HMMPIR HMMPanther
HMMTigr ProfileScan
FPrintScan BlastProDom
ScanRegExp superfamily
Gene3D Seg Coil

Keyword
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Trans-species promoter search


Check species:
Select species which should be considered for the search
Pf Pv Py Pb Cp Tg
Check motif:
Check the motifs which should be found in the indicated species in common.
CpG like region
TATA(TATA[T/A][T/A], Pattern search)
TATA(V$TATA_C, PWM search)
TATA(V$TATA_01, PWM search)
SSSP(sexual-stage specific promoter)
TATA(TATA_Pf, Pattern T[A/G]TAA)
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